BUBL LINK: Proteins

BUBL LINK Catalogue of Internet Resources

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Proteins

Titles

Descriptions

Comments: bubl@bubl.ac.uk

Biocatalog: Software directory related to molecular biology and genetics. Domains include DNA, protein, molecular evolution and databases.
Author: European Bioinformatics Institute
Subjects: genetics research, molecular biology, proteins
DeweyClass: 576.5
Resource type: software index
BioTech Graphics Gallery: Collection of labelled diagrams illustrating key processes of biotechnology for the purposes of biology teaching and learning. Includes diagrams and explanations of the structure of DNA, DNA replication, protein synthesis, control of gene expression, chemical bonds, plant cells, chromosome mutation, meiosis, mitosis, recessive and dominant inheritance, viruses and cell processes.
Author: Genentech
Subjects: biotechnology, genetics education, proteins
DeweyClass: 660.6
Resource type: guide, images
Blocks WWW Server: A service for biological sequence analysis, consisting of 2884 blocks representing 770 protein groups. Blocks are multiply aligned ungapped segments corresponding to the most highly conserved regions of proteins. Block Searcher, Get Blocks and Block Maker are aids to detection and verification of protein sequence homology. They compare a protein or DNA sequence to a database of protein blocks, retrieve blocks, and create new blocks, respectively.
Author: Fred Hutchinson Cancer Research Center, Seattle
Subjects: biochemistry, cancer research, organic chemistry, proteins
DeweyClass: 572
Resource type: reference data
EMBO Journal Online: The EMBO Journal provides for rapid publication of full length papers describing original research of general rather than specialist interest in molecular biology and related areas. The journal selects those manuscripts which merit urgent publication because they report novel findings of wide biological significance.
Author: European Molecular Biology Organization
Subjects: molecular biology, proteins
DeweyClass: 572.8
Resource type: journal
Enzyme Structures Database: Database showing the molecular structures of enzymes deposited in the Brookhaven Protein Data Bank (PDB). Entries are organised, and can be browsed, by their enzyme classification numbers.
Author: Laskowski, Roman & Wallace, Andrew
Subjects: proteins
DeweyClass: 572.7
Resource type: reference data
ExPASy Molecular Biology Server: Server dedicated to the analysis of protein sequences and structures, as well as 2-D PAGE.
Author: Swiss Institute of Bioinformatics
Subjects: biochemistry, proteins
DeweyClass: 572
Resource type: reference data
Guide to Structure Prediction: A guide to predicting protein 3D structure. Headings include sequence database searching, domain assignment, multiple sequence alignment, comparative or homology modelling, secondary structure prediction, fold recognition, analysis of fold families and alignment of secondary structures.
Author: Russell, Robert B.
Subjects: biochemistry, proteins
DeweyClass: 572
Resource type: guide
Journal of Bacteriology: Twice monthly periodical devoted to publishing research on genetics and molecular biology, structure and function, enzymes and proteins, physiology and metabolism, cell surfaces, plant microbiology, plasmids and transposons, bacteriophages, eukaryotic cells, population genetics, and evolution.
Author: American Society for Microbiology
Subjects: bacteria, microbiology research, microorganism genetics, molecular biology, plant biology, proteins
DeweyClass: 579
Resource type: journal
Mad Cows: An Infectious Agent With No Genes: Summary of the current consensus and evidence about bovine spongiform encephalopathy (BSE), CJD, and the prion hypothesis.
Author: Wisconsin University
Subjects: bse, cjd, proteins
DeweyClass: 616.8
Resource type: article
Mouse 2-D Page Kidney Protein Database: An interactive database of mouse kidney protein. Includes search options such as protein name, keyword or by listing all known proteins.
Author: University of Aarhus Danish Centre for Human Genome Research
Subjects: mice, proteins
DeweyClass: 576.5
Resource type: images, reference data
NPS@: Network Protein Sequence Analysis: Interactive Web server dedicated to protein sequence analysis and available for the biologist community Different types of analysis can be carried out using NPS@, including: sequence similarity search; sites and signatures detection; primary structure analysis; and secondary structure prediction.
Author: PBIL IBCP
Subjects: biochemistry, organic chemistry, proteins
DeweyClass: 572
Resource type: service
Principles of Protein Structure Using the Internet: International science education course. Graphical and hypertext material for the course has been supplied by 30 experts in protein structure, many of whom also contribute to email discussions and tutorials. Winner of the 1996 UCISA award for promoting good practice in the use of the Web within the UK higher education sector.
Author: Birkbeck College, London University
Subjects: chemistry education, crystallography, organic chemistry, proteins
DeweyClass: 547.75
Resource type: guide
Prion Diseases: Document describing infectious agents which do not have a nucleic acid genome. They are called prions, which are defined as 'small proteinaceous infectious particles which resist inactivation by procedures that modify nucleic acids'. Examples of prion diseases are scrapie, tme, cwd, bse, and cjd.
Author: Heaphy, Shaun
Subjects: bse, cjd, proteins
DeweyClass: 616.8
Resource type: document
Prion Diseases and the BSE Crisis: Article considering how bovine prions may have been passed to humans, resulting in a new form of CJD. Prions are transmissible particles that are devoid of nucleic acid and seem to be composed exclusively of a modified protein. BSE and human CJD are among the most notable central nervous system degenerative disorders caused by prions.
Author: Prusiner, Stanley B.
Subjects: bse, cjd, proteins
DeweyClass: 616.8
Resource type: article
Protein Information Resource: An extensive, annotated and non-redundant set of protein sequence databases in which over 115,000 entries are classified into family groups and alignments of each group are available.
Author: National Biomedical Research Foundation and Georgetown University Medical Center
Subjects: genetics research, proteins
DeweyClass: 576
Resource type: reference data
REBASE: the Restriction Enzyme Database: A collection of information about restriction enzymes, methylases, and the microorganisms from which they have been isolated - isoschizomers, recognition sequences, cleavage sites, methylation specificity, commercial availability and a bibliography.
Author: Roberts, Richard J. & Macelis, Dana
Subjects: proteins
DeweyClass: 572.7
Resource type: bibliography, documents
Scientific Journals: Biochemistry, Biophysics, Cell Biology and Molecular Biology: Set of links to journals relevant to biochemistry, biophysics, cell biology and molecular biology. Some have only subscription information online, others have tables of contents, abstracts or full text.
Author: Brownlow, Mark, science.komm
Subjects: biochemistry, cell biology, molecular biology, proteins
DeweyClass: 572
Resource type: journal index
SWISS-PROT: Annotated Protein Sequence Database: SWISS-PROT and its supplement TrEMBL are curated protein sequence databases which aim to complement other such databases. Information available includes the function and structure of a protein, its post-translational modifications and variants.
Author: Swiss Institute of Bioinformatics
Subjects: proteins
DeweyClass: 572.6
Resource type: reference data